Per Max Genes

This table shows the results of pair wise comparisons of different T-ALL groups HOX11, TAL1, LYL1 and NO-ONCOGENE (this group contains those cases without detectable misexpression of TAL1, LYL1 or HOX11 and two cases with simultaneous expression both TAL1 and LYL1 oncogenes). Genes with Permax P values <0.3 were selected to construct the hierarchical clustering of T-ALL samples shown in figure 4.
 
TAL1 high HOX11 low  P   HOX11 high TAL1 low  P   LYL1 high HOX11 low  0   NO-ONCOGENE_GROUP high HOX11 low  0  
U89922 0.006 LTB Lymphotoxin-beta S38742 0 HOX11 Homeo box 11 (T-cell lymphoma 3-associated breakpoint) M14745 0.002 BCL2 B cell lymphoma protein 2 X14448 O.49 ALPHA-GALACTOSIDASE A PRECURSOR
M12959 0.008 TCRA T cell receptor alpha-chain M13194 0.007 ERCC1 Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) S53911 0.002 CD34 CD34 antigen (hemopoietic progenitor cell antigen) NO-ONCOGENE high TAL1 low 0  
U09770 0.012 Cysteine-rich heart protein (hCRHP) mRNA U30521 0.007 FRAP FK506 binding protein 12-rapamycin associated protein S77763 0.002 NF-E2 protein (NF-E2) mRNA U79260 0.075 Clone 23745 mRNA
U51240 0.013 KIAA0085 gene, partial cds M28826 0.02 CD1B CD1b antigen (thymocyte antigen) Z68228 0.008 JUP Junction plakoglobin U30521 0.206 FRAP FK506 binding protein 12-rapamycin associated protein
U23852 0.038 T-lymphocyte specific protein tyrosine kinase p56lck (lck) abberant mRNA U79260 0.05 Clone 23745 mRNA D50915 0.012 KIAA0125 gene D00749 0.257 T-CELL ANTIGEN CD7 PRECURSOR
U43185 0.064 STAT5A Signal transducer and activator of transcription 5A M28825 0.06 CD1A CD1a antigen (thymocyte antigen) X52192 0.036 FES Feline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homolog U45982 0.268 G protein-coupled receptor GPR-9-6 gene
X62055 0.1 PTPN6 Protein tyrosine phosphatase, non-receptor type 6 M27749 0.076 Immunoglobulin-related 14.1 protein mRNA M91438 0.054 Kazal-type serine proteinase (HUSI-II) gene HG4312-HT4582 0.468 Transcription Factor Iiia
X60992 0.145 T-CELL DIFFERENTIATION ANTIGEN CD6 PRECURSOR U70323 0.099 SCA2 Spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant) U51240 0.07 KIAA0085 gene, partial cds NO-ONCOGENE high LYL1 low  0  
J05243 0.156 SPTAN1 Spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) U33822 0.112 Tax1-binding protein TXBP181 mRNA M22638 0.134 LYL-1 protein gene M69181 0.001 Nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds
X62466 0.158 CDW52 CDW52 antigen (CAMPATH-1 antigen) Y00815 0.255 PTPRF Protein tyrosine phosphatase, receptor type, f polypeptide X61118 0.15 Description for X61118 (clusters Hs.78822 Hs.100012) not available X62535 0.117 DAGK1 Diacylglycerol kinase, alpha (80kD)
Y11215 0.159 SKAP55 protein M94250 0.304 MDK Midkine (neurite growth-promoting factor 2) X72889 0.162 Transcriptional activator hSNF2a D86479 0.253 Non-lens beta gamma-crystallin like protein (AIM1) mRNA, partial cds
Y00796 0.207 ITGAL Integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) X58521 0.403 NUCLEAR PORE GLYCOPROTEIN P62 S82470 0.164 BB1 J03077 0.374 PSAP Sulfated glycoprotein 1
J03077 0.214 PSAP Sulfated glycoprotein 1 X75304 0.434 Golgi antigen gcp372 M33552 0.166 Lymphocyte-specific protein 1 (LSP1) mRNA      
L25931 0.231 LBR Lamin B receptor L17131 0.487 HMGIY High mobility group (nonhistone chromosomal) protein isoforms I and Y D87460 0.242 KIAA0270 gene, partial cds      
M80244 0.237 INTEGRAL MEMBRANE PROTEIN E16 HOX11 high LYL1 low P   HG3521-HT3715 0.269 Ras-Related Protein Rap1b      
X16064 0.237 TRANSLATIONALLY CONTROLLED TUMOR PROTEIN M28826 0.003 CD1B CD1b antigen (thymocyte antigen) U28014 0.282 ICH-2 PROTEASE PRECURSOR      
U13991 0.251 TATA-binding protein associated factor 30 kDa subunit (tafII30) mRNA AB001325 0.013 AQP3 Aquaporin 3 U67963 0.327 Lysophospholipase homolog (HU-K5) mRNA      
D43968 0.261 CBFA2 Proto-oncogene AML1 {alternative products} S38742 0.023 HOX11 Homeo box 11 (T-cell lymphoma 3-associated breakpoint) M13241 0.339 N-MYC PROTO-ONCOGENE PROTEIN      
K02777 0.286 T-cell receptor active alpha-chain mRNA from Jurkat cell line X66945 0.142 FGFR1 Basic fibroblast growth factor (bFGF) receptor (shorter form) X87212 0.348 CTSC Cathepsin C      
J04182 0.297 LAMP1 Lysosome-associated membrane protein 1 U21090 0.335 DNA polymerase delta small subunit mRNA D83735 0.372 Adult heart mRNA for neutral calponin      
U89336 0.304 Description for U89336 (clusters Hs.184 Hs.5205 Hs.6587 Hs.34606 Hs.79985 Hs.81737 Hs.96387) not available X78136 0.38 HnRNP-E2 mRNA U19713 0.372 Allograft inflammatory factor-1 (AIF-1) mRNA      
X16832 0.305 CTSH Cathepsin H L40386 0.389 DP2 (Humdp2) mRNA M38449 0.382 Transforming growth factor-beta mRNA, clone pTGF-beta-trp114      
U37146 0.308 Silencing mediator of retinoid and thyroid hormone action (SMRT) mRNA M69181 0.439 Nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds L13738 0.391 Activated p21cdc42Hs kinase (ack) mRNA      
M23323 0.31 T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN PRECURSOR U73379 0.456 Cyclin-selective ubiquitin carrier protein mRNA Y00433 0.438 GPX1 Glutathione peroxidase 1      
D11086 0.362 IL2RG Interleukin 2 receptor gamma chain U93049 0.46 SLP-76 associated protein mRNA D13370 0.492 DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE      
U86070 0.408 PMM1 Phosphomannomutase M92287 0.463 CCND3 Cyclin D3 LYL1 high TAL1 low  0        
D83735 0.449 Adult heart mRNA for neutral calponin U33822 0.471 Tax1-binding protein TXBP181 mRNA M14745 0 BCL2 B cell lymphoma protein 2      
L76200 0.449 Guanylate kinase (GUK1) mRNA HOX11 high NO-ONCOGENE_GROUP low  P   D50915 0.001 KIAA0125 gene      
Z69043 0.482 mRNA translocon-associated protein delta subunit precursor S38742 0.002 HOX11 Homeo box 11 (T-cell lymphoma 3-associated breakpoint) M22638 0.001 LYL-1 protein gene      
U65785 0.488 150 kDa oxygen-regulated protein ORP150 mRNA M80397 0.353 POLD1 Polymerase (DNA directed), delta 1, catalytic subunit (125kD) X52192 0.005 FES Feline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homolog      
X57398 0.488 NME1 Non-metastatic cells 1, protein (NM23A) expressed in HG919-HT919 0.418 Dna Polymerase, Epsilon, Catalytic Subunit U67963 0.014 Lysophospholipase homolog (HU-K5) mRNA      
TAL1 high LYL1 low P   M15205 0.484 TK1 Thymidine kinase 1, soluble X61118 0.038 Description for X61118 (clusters Hs.78822 Hs.100012) not available      
M16336 0.003 CD2 CD2 antigen (p50), sheep red blood cell receptor       M91438 0.04 Kazal-type serine proteinase (HUSI-II) gene      
U23852 0.011 T-lymphocyte specific protein tyrosine kinase p56lck (lck) abberant mRNA       M27749 0.081 Immunoglobulin-related 14.1 protein mRNA      
J03077 0.02 PSAP Sulfated glycoprotein 2       M13241 0.097 N-MYC PROTO-ONCOGENE PROTEIN      
L76200 0.046 Guanylate kinase (GUK1) mRNA       U38847 0.116 TAR RNA loop binding protein (TRP-185) mRNA      
S78187 0.051 M-PHASE INDUCER PHOSPHATASE 2       U70027 0.125 Description for U78027 (clusters Hs.3136 Hs.15593 Hs.85020) not available      
J05243 0.052 SPTAN1 Spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)       S77763 0.175 NF-E2 protein (NF-E2) mRNA      
M92287 0.072 CCND3 Cyclin D3       X72889 0.187 Transcriptional activator hSNF2a      
X76223 0.072 MAL gene exon 4       HG987-HT987 0.202 Mac25      
U37146 0.103 Silencing mediator of retinoid and thyroid hormone action (SMRT) mRNA       D88270 0.218 Immunoglobulin lambda gene locus DNA, clone:123E1      
X59871 0.108 TCF7 Transcription factor 7 (T-cell specific)       S53911 0.247 CD34 CD34 antigen (hemopoietic progenitor cell antigen)      
M33197 0.188 GAPDH       S82470 0.305 BB1      
X62535 0.223 DAGK1 Diacylglycerol kinase, alpha (80kD)       Z68228 0.32 JUP Junction plakoglobin      
U86070 0.228 PMM1 Phosphomannomutase       U60975 0.336 Hybrid receptor gp250 precursor mRNA      
J04823 0.248 CYTOCHROME C OXIDASE POLYPEPTIDE VIII-LIVER/HEART PRECURSOR       L13738 0.353 Activated p21cdc42Hs kinase (ack) mRNA      
X60992 0.248 T-CELL DIFFERENTIATION ANTIGEN CD6 PRECURSOR       Y12670 0.388 LEPR Leptin receptor      
X62534 0.253 HMG2 High-mobility group (nonhistone chromosomal) protein 2       S69272 0.39 Cytoplasmic antiproteinase      
AB001325 0.282 AQP3 Aquaporin 3       M55621 0.4 MGAT1 N-acetylglucosaminyltransferase I      
M17733 0.29 Thymosin beta-4 mRNA       X04085 0.415 CAT Catalase      
X62466 0.304 CDW52 CDW52 antigen (CAMPATH-1 antigen)       X05276 0.427 TPM4 Tropomyosin 4 (fibroblast)      
X95404 0.304 CFL1 Cofilin 1 (non-muscle)       U20240 0.461 CEBPG CCAAT/enhancer binding protein (C/EBP), gamma      
M69181 0.321 Nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds       LYL1 high NO-ONCOGENE_GROUP low  0        
M75126 0.322 HK1 Hexokinase 1       M14745 0.015 BCL2 B cell lymphoma protein 2      
M38591 0.358 S100A10 S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))       X72889 0.102 Transcriptional activator hSNF2a      
M10277 0.385 ACTB Actin, beta       M22638 0.131 LYL-1 protein gene      
U18009 0.403 Chromosome 17q21 mRNA clone LF113       Z68228 0.139 JUP Junction plakoglobin      
M12886 0.434 TCRB T-cell receptor, beta cluster       M91438 0.187 Kazal-type serine proteinase (HUSI-II) gene      
X17567 0.442 SNRPB Small nuclear ribonucleoprotein polypeptides B and B1       X02596 0.217 Bcr (breakpoint cluster region) gene in Philadelphia chromosome      
J04173 0.457 PGAM1 Phosphoglycerate mutase 1 (brain)       D17793 0.256 DDH1 Dihydrodiol dehydrogenase      
TAL high NO-ONCOGENE_GROUP low  P         U67963 0.27 Lysophospholipase homolog (HU-K5) mRNA      
M12959 0.016 TCRA T cell receptor alpha-chain       M13241 0.302 N-MYC PROTO-ONCOGENE PROTEIN      
K02777 0.177 T-cell receptor active alpha-chain mRNA from Jurkat cell line       U78027 0.319 Description for U78027 (clusters Hs.3136 Hs.15593 Hs.85020) not available      
D43968 0.271 CBFA2 Proto-oncogene AML1 {alternative products}       Y12670 0.324 LEPR Leptin receptor      
U09770 0.287 Cysteine-rich heart protein (hCRHP) mRNA       U51903 0.399 RasGAP-related protein (IQGAP2) mRNA      
M16336 0.44 CD2 CD2 antigen (p50), sheep red blood cell receptor       U60975 0.4143 Hybrid receptor gp250 precursor mRNA      
            S77763 0.44 NF-E2 protein (NF-E2) mRNA      
            X04085 0.468 CAT Catalase      
            HG987-HT987 0.485 Mac25