Supplementary Table 2 Predicted regions of amplification a
|
Cell lines |
Cytoband |
Inner boundary SNP |
Outer boundary SNP |
||
| TSC SNP ID | Coordinate (bp) | TSC SNP ID | Coordinate (bp) | ||
| H1395 | 8q24.12 |
482148 - 697652 |
119372630 - 119431201 |
550453
- 478118 |
119038572
- 119511136 |
| H1395 |
8q24.21 |
511315
- 1600552 |
127946031
- 127946251 |
55150
- 741747 |
127458141
- 128189444 |
| H1395 |
20q11.23 – q13.11 |
192382
– 1394469 |
3716026
- 3716082 |
1101758
- 192802 |
3562204
- 4181750 |
| H2171 |
8q12.1 - q12.3 |
162712
- 57318 |
61337616 - 63060501 |
548814
- 643218 |
60964465
- 63597287 |
| H2171 |
8q24.13
– q24.21 |
554703
- 1600552 |
126862453
-127946251 |
719292
- 741747 |
126105733
-128189444 |
| H2171 |
11q14.1-q14.2 |
535319 – 1007318 | 87073387 – 88739204 | 50154 - 538098 | 86965494 - 89079691 |
| H2171 | 12 p11.23- p11.22 | 50358
– 83456 |
27951603
- 29808366 |
556975
- 550551 |
27559809
- 30768125 |
| HCC1143 |
11q13.1 – 11q13.4 |
1006748
– 728109 |
71771926
- 72229899 |
1013744
– 863015 |
66987056
- 73283151 |
| HCC1143 |
12q14.3-q15 |
873094
- 66523 |
65754119
- 67737459 |
528581
– 949662 |
64837463
- 67833380 |
| HCC1599 |
19q12-q13.12 |
517515
- 157971 |
31498425
- 35999411 |
517542 – 46244 |
30652680 - 36415475 |
| HCC2218 |
17q11.2 |
568588
– 61444 |
31562186 - 31688430 |
568589
– 643880 |
31462761
- 32452192 |
| HCC2218 |
17q25.1 |
174931
– 702103 |
71525882
- 73219860 |
49181
- 273465 |
71255658
- 74072272 |
| BT-474 |
17q12 –q21.2 |
135034
– 61951 |
34875748
- 36943030 |
47334
– 45268 |
33787363
- 38428761 |
| BT-474 |
20q13.2
– q13.31 |
51937 – 1101890 |
50736301 - 53177053 |
1264890
– 48896 |
50435470
- 54046223 |
| UACC-812 |
13q14.2-q14.3 |
532083
- 1646241 |
47456041
- 49332015 |
466487
– 59987 |
46671044
- 51375838 |
| UACC-812 |
13q21.31-q21.33 |
297920
– 271967 |
61039213
- 68331749 |
615791 – 323325 |
60327814
- 68914873 |
| UACC-812 |
13q22.2-q31.1 |
599364
– 56748 |
73619505 - 76951495 |
59630
– 993631 |
73243141
- 77340368 |
| UACC-812 |
13q31.3 |
479777
– 289179 |
89803002
– 92536158 |
17181
– 832984 |
89728496
- 92972044 |
| MCF7 |
3p14.2-p14.1 |
883753
– 63760 |
60956148 - 63793428 |
274859 – 1136744 | 60313100 - 64053279 |
| MCF7 | 20q13.2-
20q13.31 |
543737 – 1101890 |
52397353 - 53177053 |
229430
– 48896 |
51587728
- 54046223 |
| 10372 |
12q12
– q13.11 |
426788 – 793229 |
41588210 - 47500893 |
376600 – 58596 | 41365633 - 47578017 |
Cytoband and SNP position are based on hg12 human genome assembly.
a Predicted
regions containing at least two SNPs with inferred copy number > or =
7.