Supplementary Table 3 Predicted
regions of homozygous deletion
a
|
Cell lines |
Cytoband | Inner boundary of
SNP |
Outer boundary of SNP | ||
|
TSC SNP ID |
Coordinate (bp) |
TSC SNP ID |
Coordinate (bp) |
||
| NCI-H1648 | 3p14.2 | 61868 - 49657 |
59275506 - 59486920 |
62015 - 39587 |
59173590 - 59675955 |
| NCI-H1648 | 9p21.3 | 827950 - 412867 |
22039263 - 22427156 |
56694 - 30988 |
21863164 - 22542884 |
| NCI-H1648 |
Xq21.31-Xq21.33 |
905540 - 1367762 |
88117106 - 90000130 |
46327 - 1363744 |
86809471
- 91314370 |
| NCI-H2141 | 10p12.1 | 607740 – 609025 |
25327272 - 25589032 |
609991 – 609027 |
24764155
- 25593671 |
| HCC1187 | 14q23.2 |
113221
– 347144 |
61069865
- 61114885 |
39090
- 1491328 |
60830231
- 61835629 |
| HCC1599 |
4q35.1-q35.2 |
1339870 - 38961 |
187685712 - 191745816 |
59820 - 38961 |
187582635 - 191745816 |
| HCC1937 | 10q21.3 | 967368 – 917434 |
65305895 - 66068559 |
891364A – 39512 |
64405219 - 66445167 |
| HCC38 | 3p12.3-p12.2 | 53739 – 543759 |
76422488 - 78905445 |
530637 – 544257 |
73152178 - 79014826 |
| HCC38 | 9p21.3-p21.1 | 139369 - 490867 |
22309171 - 32355643 |
376564 – 367220 |
22112892 - 32829081 |
| HCC1395 | 6q16.1 |
598815
– 72977 |
94872300
- 95303492 |
553269 – 1262138 |
94609173
- 96640669 |
| HCC1395 |
6q16.3-q21 |
998998
– 50825 |
102933294
- 105809228 |
832117 – 999996 |
101969135
- 106394898 |
| HCC1395 | 11p13-p12 |
496883 – 47295 |
37766498
- 37885472 |
563913 – 1687784 |
37644016
- 39241510 |
| HCC1395 |
13q14.3-q21.2 |
59987
– 771341 |
51375838
- 59367547 |
1646241
– 1386716 |
49332015 - 59698794 |
| HCC1395 |
Xq21.1-q21.2 |
56485 - 273216 |
78943143 - 79682123 |
326961 – 56341 |
77717751 - 80244093 |
| MCF7 | 3q13.31 | 53616 - 644663 |
113099865 - 113319767 |
974851 - 926456 |
112971628 -113376212 |
| 10372 | 1p13.1-p12 | 15908 - 807769 |
118656720 - 119501166 |
861214 - 959453 |
118612535 - 119619140 |
| 10372 | 19p13.3 | 1109039 - 549315 |
3683929 - 5515766 |
1109039 - 1114253 |
3683929 - 9725290 |
Cytoband and SNP position
are based on hg12 human genome assembly.
a Predicted regions of at least 1 kb in size containing at least two SNPs with inferred copy number = 0.