Departments of Medical Oncology & Cancer Biology

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L i n k s Developmental Biology Society Google search engine Harvard medical school Harvard medical library portal National Library of Medicine Nature publishing group NCBI resources PubMed online Fellow DFCI Researchers - - - - - - - - - - -                    Essential genomic tools / databases    Gene/protein annotation databases:    Ensembl    Goldenpath and Blat map everything to genome and visualize it.    TransFAC database curated TF bind site DB.    GeneCards    Sequence Alignment Tools   (Hats off to EBML-EBI tools!)    EMBL sequence analysis tools (RECOMMENDED!)    ClustalW (global multiple alignment)    MPsrch (accelerated Smither/Waterman local alignment)    Sequence Analysis Tools    InterProScan (integrated protein signature/domain/family scan)    GenomeScan (defacto Eukar. gene finder)    MEME (motif finder using EM)    Bioprospector (motif finder)    S Eddy homepage (various RNA feature detect tools)            Expression Datasets (Mammalian)    Gene Expression Atlas (adult MMus/HS profiling of 45 tissues)    GXD(various Mouse gene expression data)    READ (RIKEN's expr profiling of various mouse dev pathways)        Microarray Analysis/Clustering Tools                    Others